Initial commit

2024-09-08 23:35:23 +02:00
parent 2049c6ab70
commit bbd08001ff
9 changed files with 998 additions and 1 deletions
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -0,0 +1,77 @@
+version: '3.7'
+
+services:
+
+  # HTTP Server (Nginx) providing FHIR NPM repository with packages from our local directory ./packages
+  fhir-packages-repository-service:
+    image: nginx
+    restart: unless-stopped
+    volumes:
+      # The FHIR NPM packages (.tgz archives) are located in local directory ./packages
+      # This source directory with the FHIR packages is mounted as the Nginx http server standard content directory /usr/share/nginx/html
+      - ./packages:/usr/share/nginx/html:ro
+
+
+  # FHIR Server (HAPI)
+  fhir-validation-server:
+    # HAPI FHIR (https://hapifhir.io/)
+    image: hapiproject/hapi:v7.0.3
+    restart: unless-stopped
+
+    depends_on:
+      - fhir-packages-repository-service
+    ports:
+      - 8080:8080
+
+    environment:
+
+      # Load FHIR NPM Package with MII Kerndatensatz module and its dependencies from NPM repository packages.fhir.org mocked by fhir-packages-repository-service
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_DEBASIS_NAME: "de.basisprofil.r4"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_DEBASIS_VERSION: "1.4.0"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_DEBASIS_PACKAGEURL: "http://fhir-packages-repository-service/de.basisprofil.r4-1.4.0.tgz"
+      #HAPI_FHIR_IMPLEMENTATIONGUIDES_DEBASIS_PACKAGEURL: "http://fhir-packages-repository-service/de.basisprofil.r4-1.4.0-explicit-versions-in-valueset.tgz"
+
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSMETA_NAME: "de.medizininformatikinitiative.kerndatensatz.meta"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSMETA_VERSION: "1.0.3"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSMETA_PACKAGEURL: "http://fhir-packages-repository-service/de.medizininformatikinitiative.kerndatensatz.meta-1.0.3.tgz"
+
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSPERSON_NAME: "de.medizininformatikinitiative.kerndatensatz.person"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSPERSON_VERSION: "2024.0.0"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSPERSON_PACKAGEURL: "http://fhir-packages-repository-service/de.medizininformatikinitiative.kerndatensatz.person-2024.0.0.tgz"
+
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSDIAGNOSE_NAME: "de.medizininformatikinitiative.kerndatensatz.diagnose"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSDIAGNOSE_VERSION: "2024.0.0"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSDIAGNOSE_PACKAGEURL: "http://fhir-packages-repository-service/de.medizininformatikinitiative.kerndatensatz.diagnose-2024.0.0.tgz"
+
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSPROZEDUR_NAME: "de.medizininformatikinitiative.kerndatensatz.prozedur"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSPROZEDUR_VERSION: "2024.0.0"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSPROZEDUR_PACKAGEURL: "http://fhir-packages-repository-service/de.medizininformatikinitiative.kerndatensatz.prozedur-2024.0.0.tgz"
+
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSFALL_NAME: "de.medizininformatikinitiative.kerndatensatz.fall"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSFALL_VERSION: "2024.0.1"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSFALL_PACKAGEURL: "http://fhir-packages-repository-service/de.medizininformatikinitiative.kerndatensatz.fall-2024.0.1.tgz"
+
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_HL7FHIRUVIPS_NAME: "hl7.fhir.uv.ips"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_HL7FHIRUVIPS_VERSION: "1.0.0"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_HL7FHIRUVIPS_PACKAGEURL: "http://fhir-packages-repository-service/hl7.fhir.uv.ips-1.0.0.tgz"
+
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSLABORBEFUND_NAME: "de.medizininformatikinitiative.kerndatensatz.laborbefund"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSLABORBEFUND_VERSION: "1.0.6"
+      HAPI_FHIR_IMPLEMENTATIONGUIDES_MIIKDSLABORBEFUND_PACKAGEURL: "http://fhir-packages-repository-service/de.medizininformatikinitiative.kerndatensatz.laborbefund-1.0.6.tgz"
+
+
+  jupyter:
+    image: jupyter/scipy-notebook
+    restart: unless-stopped
+    ports:
+      - 80:8888
+    # set custom token
+    command: start-notebook.py --NotebookApp.token='${JUPYTER_TOKEN}'
+    environment:
+      # set credentials in .env so this docker-compose.yml can be fully versioned in git!
+      FHIR_VALIDATION_DATASOURCE_BASEURL: ${FHIR_VALIDATION_DATASOURCE_BASEURL}
+      FHIR_VALIDATION_DATASOURCE_AUTH_NAME: ${FHIR_VALIDATION_DATASOURCE_AUTH_NAME}
+      FHIR_VALIDATION_DATASOURCE_AUTH_PASSWORD: ${FHIR_VALIDATION_DATASOURCE_AUTH_PASSWORD}
+
+    volumes:
+      - ./home/:/home/jovyan/