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missing file update for v1.0.1

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This commit is contained in:
Tom Gebhardt 2025-05-12 13:29:31 +02:00
parent d5c2d2ca64
commit a9c54bfe11
1 changed files with 5 additions and 2 deletions
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7
import_fhir_to_nx_diGraph.py
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@ -24,18 +24,21 @@ from fhirImport import getPatientEverything, getBundle
def load_multiple_fhir_patients(n): def load_multiple_fhir_patients(n):
#graph = nx.DiGraph() #graph = nx.DiGraph()
init = True init = True
initLoad = True
ids = [] ids = []
#get n ids #get n ids
nextIds = True nextIds = True
while len(ids) < n and nextIds: while len(ids) < n and nextIds:
if init: if initLoad:
complex = os.getenv('COMPLEX_PATIENTS') complex = os.getenv('COMPLEX_PATIENTS')
if complex and complex.upper() != 'TRUE': if complex and complex.upper() != 'TRUE':
bundle = getBundle(None, '/Patient?_count=' + str(n)) bundle = getBundle(None, '/Patient?_count=' + str(n))
else: else:
bundle = getBundle(None, '/Patient?_has:Observation:subject:status=final&_count=' + str(n)) bundle = getBundle(None, '/Patient?_has:Observation:subject:status=final&_count=' + str(n))
initLoad = False
else: else:
bundle = getBundle(None, nextLink) print("NEXT LINK: ", nextLink, flush=True)
bundle = getBundle(nextLink, None)
if not 'entry' in bundle.json(): if not 'entry' in bundle.json():
print("ERROR -- No data found in the fhir bundle. Check the request and if the server is up and responding") print("ERROR -- No data found in the fhir bundle. Check the request and if the server is up and responding")