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Tom Gebhardt

2025-04-16 22:12:19 +02:00

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.bumpversion.cfg.env.example

.gitea/actions/test

action.yaml

.gitignore.gitmodules.pre-commit-config.yamlDockerfileLICENSEREADME.md

biocypher

__init__.py

_config

__init__.pybiocypher_config.yamltest_config.yamltest_schema_config.yamltest_schema_config_disconnected.yamltest_schema_config_extended.yaml

_core.py_create.py_deduplicate.py_get.py_logger.py_mapping.py_metadata.py_misc.py_ontology.py_translate.py

output

__init__.py

connect

__init__.py_neo4j_driver.py

in_memory

__init__.py_pandas.py

write

__init__.py_batch_writer.py_get_writer.py_writer.py

graph

__init__.py_arangodb.py_neo4j.py_networkx.py_rdf.py

relational

__init__.py_csv.py_postgresql.py_sqlite.py

config

biocypher_config.yaml

head_ontology

biolink-model.owl.ttl

manual_schema_config.yaml

docker-compose.ymlentrypoint.shfhirImport.py

graphCreation

create_graph.pynode_typing.pyprocess_references.pyproperty_convolution.py

import_fhir_to_nx_diGraph.pyimport_nx_diGraph.py

init-scripts

setup.cypher

mockData

short_Johnny_Schoen.jsonshort_hospitalInformation.jsonshort_practitionerInformation.json

pipeline.pumlpoetry.lockpyproject.tomlrequirements.txtschema_config_generation.py

testData

Alfonzo975_Medhurst46_cab042ec-9851-e5ed-80c8-0952376f5b08.jsonArmand155_Wilkinson796_4b633a8e-a312-8675-4af4-3519bfa6b00e.jsonConrad619_Zemlak964_881bcdd0-ce56-0da9-f297-696da35bd4a3.jsonDaysi106_Borer986_0096fcc6-e2d6-5aed-4790-beda6322c9be.jsonDomingo513_Durgan499_97fcce97-37ab-3fa7-d3d7-0729d60afcb5.jsonDonnell534_Koss676_5fcaaba4-cfdf-43a8-95c6-7d9f2fa6905e.jsonDorthy94_Klocko335_50390ac6-8c15-46f2-3b23-767f52a2e80c.jsonEmmie273_Reinger292_630e4b67-6e16-6bc7-6f28-2544b1a5d4d7.jsonFlorentino8_Abshire638_462cc215-c055-3e77-8e4c-9d3bf7f886f5.jsonJadwiga271_Thompson596_9973ad84-42ec-deda-23c2-906f81838e93.jsonJimmie93_Pfeffer420_b60cecd8-24c6-7983-3915-3bd6e8ede863.jsonJohnny786_Schoen8_a7a285c0-4714-dd3c-4837-8719c9b67873.jsonLala778_Jerilyn993_Cole117_ecf9d885-b712-e318-a6fa-f1ec9ffdbde8.jsonLilia791_Herrera193_8ebd900a-3563-5008-1fa9-9614ef666647.jsonLois157_Becker968_258cfb42-3e7c-be88-92fd-f31c94f3e76e.jsonMarlana402_Hansen121_8c570871-8d00-8c04-5da3-1ef43ed00f76.jsonMonte325_Prosacco716_2268a882-1b01-f71f-4377-a0dd87a78dd9.jsonMurray856_Lesch175_0759e805-61d1-ba2b-8b14-9e4308784a84.jsonNiesha86_Anderson154_2e96848a-43c1-78ea-16f2-d9d471d0f9d2.jsonPerry780_Gaylord332_c6456550-9c7a-0cf3-c18b-b266ba91ef1b.jsonPetronila724_Rutherford999_ec8f677e-0e42-d13a-b292-ff50216121b2.jsonVernetta697_Garnett735_Schaden604_d69b1a9b-e1e3-0b42-07c1-b37cae947f7f.jsonhospitalInformation1693908535569.jsonpractitionerInformation1693908535569.json

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config/head_ontology/biolink-model.owl.ttl Normal file

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