release commit

fhirImport.py

@@ -0,0 +1,66 @@
+import requests
+from typing import List, Dict, Any
+from dotenv import load_dotenv
+import os
+from requests.auth import HTTPBasicAuth
+
+# Load environment variables from .env file
+load_dotenv()
+
+def getBundle(url: str, search: str):
+    headers = {
+        'Accept': 'application/fhir+json',
+        'Content-Type': 'application/fhir+json'
+    }
+
+    # Get configuration from environment variables
+    mode = os.getenv('MODE')
+    fhir_server = os.getenv('FHIR_SERVER_URL')
+
+    if mode != 'testsever':
+        username = os.getenv('FHIR_SERVER_USER')
+        password = os.getenv('FHIR_SERVER_PW')
+
+    
+    if not fhir_server:
+        raise ValueError("FHIR_SERVER_URL not found in environment variables")
+    if (not username or not password) and mode != 'testserver':
+        raise ValueError("FHIR_USERNAME and FHIR_SERVER_PW must be set in environment variables")
+    
+    # Setup basic authentication
+    auth = HTTPBasicAuth(username, password)
+
+    
+    if url is not None:
+        link = url + '?_format=json'
+    else:
+        link = fhir_server + search + '&_format=json'
+
+    #print(link)
+
+    if mode != 'testserver':
+        response = requests.get(
+            link,
+            headers=headers,
+            auth=auth
+        )
+    else:
+        response = requests.get(
+            link,
+            headers=headers,
+        )
+    return response
+
+def getPatientEverything(id: str):
+    search = '/Patient/' + id +  '/$everything?'
+    return getBundle(None, search)
+
+
+# Example usage
+if __name__ == "__main__":
+    bundles = get_bundles(None)
+    data = bundles.json()
+    
+    # Process the bundles
+    for entry in data['entry']:
+        print(f"{entry['fullUrl']}")