init orphan

config/biocypher_config.yaml

@@ -0,0 +1,18 @@
+# add your settings here (overriding the defaults)
+
+biocypher:
+  dbms: neo4j
+  offline: true
+  #debug: true
+  output_directory: /neo4j_import #comment if you want to debug, so that bc creates a new folder for each run in /biocypher-out
+  schema_config_path: config/automated_schema.yaml #config/automated_schema.yaml
+
+  head_ontology:
+    url: config/head_ontology/biolink-model.owl.ttl
+    root_node: entity
+
+neo4j:
+  delimiter: '\t'
+  array_delimiter: '|'
+  skip_duplicate_nodes: true
+  skip_bad_relationships: true