medax_pipeline/config/biocypher_config.yaml
2025-04-16 22:12:19 +02:00

19 lines
488 B
YAML

# add your settings here (overriding the defaults)
biocypher:
dbms: neo4j
offline: true
#debug: true
output_directory: /neo4j_import #comment if you want to debug, so that bc creates a new folder for each run in /biocypher-out
schema_config_path: config/automated_schema.yaml
head_ontology:
url: config/head_ontology/biolink-model.owl.ttl
root_node: entity
neo4j:
delimiter: '\t'
array_delimiter: '|'
skip_duplicate_nodes: true
skip_bad_relationships: true