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Tom Gebhardt 2025-04-24 15:32:28 +02:00
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@ -98,13 +98,12 @@ The MeDaX pipeline consists of the following components:
## ✍️ Citation ## ✍️ Citation
If you use the MeDaX pipeline in your research, please cite: 10.5281/zenodo.15229077 If you use the MeDaX pipeline in your research, please cite: 10.5281/zenodo.15229077 and Mazein, I and Gebhardt, T et al. [MeDaX, a knowledge graph on FHIR.](https://doi.org/10.3233/shti240423)
## 🙏 Acknowledgements ## 🙏 Acknowledgements
- We are leveraging [BioCypher](https://biocypher.org) [![DOI](https://zenodo.org/badge/DOI/10.1038/s41587-023-01848-y.svg)](https://doi.org/10.1038/s41587-023-01848-y) to create the Neo4j admin input. - We are leveraging [BioCypher](https://biocypher.org) [![DOI](https://zenodo.org/badge/DOI/10.1038/s41587-023-01848-y.svg)](https://doi.org/10.1038/s41587-023-01848-y) to create the Neo4j admin input.
- Remark: We slight adjustments to BioCypher's code to support batching. - Remark: We introduced slight adjustments to BioCypher's code to support batching.
- We used BioCypher's git template as a starting point for our development: - We used BioCypher's git template as a starting point for our development:
- Lobentanzer, S., BioCypher Consortium, & Saez-Rodriguez, J. Democratizing knowledge representation with BioCypher [Computer software]. https://github.com/biocypher/biocypher - Lobentanzer, S., BioCypher Consortium, & Saez-Rodriguez, J. Democratizing knowledge representation with BioCypher [Computer software]. https://github.com/biocypher/biocypher
- We used synthetic data generated with [Synthea](https://doi.org/10.1093/jamia/ocx079) during the development process. This data is provided in the testData folder.